species:   Rhsol
pid:       PID0604
parent:    Rhi-milR-7
paralog:   
locus:     KB318401.1:54-126
matures:   ['AAUCCUGUAUGAGACUCUGUGC', 'AAGACACACAUCCAGGACAUGU']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB318401.1:54-126

15 out of bounds
17 alignments
14 proper strand
13 stranded perfect matches

          *************************   *************************          
UUUGUUGGGAGCAAGACACACAUCCAGGACAUGUUUGAUGCAAUCCUGUAUGAGACUCUGUGCUCUAUGCCAG
.......(((((((((..(.(((.(((((..(((.....))).))))).))).)..))).)))))).......
-----------------------------------------AAUCCUGUAUGAGACUCUGUGC---------- l=22 a=2 c
------------AAGACACACAUCCAGGACAUGU--------------------------------------- l=22 a=0 c*
----------------------------------------CAAUCCUGUAUGAGACUCUGUGC---------- l=23 a=3 ma
------------AAGACACACAUCCAGGACAUGUU-------------------------------------- l=23 a=0 ma*

-------------------------------------------UCCUGUAUGAGACUCUGUGC---------- l=20 a=3 
-------------------------------------------UCCUGUAUGAGACUCUGUGCU--------- l=21 a=1 
------------------------------------------AUCCUGUAUGAGACUCUGUGCU--------- l=22 a=1 
-----------------------------------------AAUCCUGUAUGAGACUCUGUGC---------- l=22 a=2 (c)
----------------------------------------CAAUCCUGUAUGAGACUCUGUGC---------- l=23 a=3 (ma)
--------------------------------------UGCAAUCCUGUAUGAGACUC--------------- l=20 a=1 
--------------------------------------UGCAAUCCUGUAUGAGACUCUGUG----------- l=24 a=1 
-----------------------------------UGAUGCAAUCCUGUAUGAGACUCUGU------------ l=26 a=1 
--UGUUGGGAGCAAGACACAu---------------------------------------------------- l=19 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101100
fn-111
